How to Calculate Payroll Withholdings Manually (2026)

Updated April 2026 · 12 min read

Quick Summary: To calculate an employee's net pay: Start with gross pay, subtract pre-tax deductions (401k, health insurance), then calculate and subtract federal income tax, FICA (7.65%), and state tax. The remainder is take-home pay. Use our payroll calculator to verify your manual calculations.

Step 1: Calculate Gross Pay

For Salaried Employees

Formula: Gross Pay per Period = Annual Salary ÷ Number of Pay Periods
Example: $60,000 ÷ 26 (bi-weekly) = $2,307.69 per paycheck
Pay FrequencyPay Periods/Year$60K Salary Per Period
Weekly52$1,153.85
Bi-weekly26$2,307.69
Semi-monthly24$2,500.00
Monthly12$5,000.00

For Hourly Employees

Formula: Gross Pay = (Regular Hours × Rate) + (Overtime Hours × Rate × 1.5)
Example: (40 hrs × $25) + (5 hrs × $25 × 1.5) = $1,000 + $187.50 = $1,187.50

Step 2: Subtract Pre-Tax Deductions

Pre-tax deductions reduce your taxable income, lowering your tax burden:

Deduction Type2026 Limit (Annual)Tax Treatment
Traditional 401(k)$23,500Exempt from federal + state income tax, NOT exempt from FICA
401(k) Catch-up (50+)+$7,500Same as 401(k)
Health Insurance (Section 125)VariesExempt from federal, state, AND FICA
HSA (Self-only)$4,300Exempt from federal, state, AND FICA
HSA (Family)$8,550Same as HSA
FSA (Dependent Care)$5,000Exempt from federal, state, AND FICA
⚠️ Key Difference: 401(k) contributions reduce income tax but NOT FICA. Section 125 (health insurance) reduces BOTH income tax and FICA. This distinction matters for manual calculations.

Step 3: Calculate Federal Income Tax Source: IRS Pub 15-T

Use the IRS Percentage Method tables from Publication 15-T:

A. Determine Adjusted Wages

Formula: Adjusted Wages = Gross Pay - Pre-Tax Deductions - (Standard Deduction ÷ Pay Periods)
For single filer: $2,307.69 - $192.31 (6% of $60K 401k bi-weekly) - $604.17 ($16,100 ÷ 26) = $1,511.21

B. Apply 2026 Tax Brackets (Single Filer, Bi-Weekly)

BracketRateBi-Weekly Range
First $45810%$0 – $458
$458 – $1,53312%$458 – $1,533
$1,533 – $3,85822%$1,533 – $3,858
$3,858 – $7,75024%$3,858 – $7,750
$7,750 – $9,66232%$7,750 – $9,662
$9,662 – $24,13535%$9,662 – $24,135
Over $24,13537%$24,135+

Step 4: Calculate FICA Taxes

FICA Formula:
Social Security = Gross Pay × 6.2% (up to $184,500 annual wage base)
Medicare = Gross Pay × 1.45% (no wage cap)
Additional Medicare = 0.9% on wages over $200,000/year

Example: $2,307.69 Bi-Weekly Pay

TaxRateAmount
Social Security6.2%$143.08
Medicare1.45%$33.46
Total FICA7.65%$176.54

Step 5: Calculate State Income Tax

Each state has different rules. Common approaches include:

  • Flat rate states (IL, PA, etc.) — Simply multiply by the flat percentage
  • Progressive bracket states (CA, NY, etc.) — Use state-specific bracket tables
  • No income tax states (TX, FL, WA, etc.) — Skip this step entirely

Step 6: Calculate Net Pay

Net Pay Formula:
Net Pay = Gross Pay - Pre-Tax Deductions - Federal Tax - FICA - State Tax - Post-Tax Deductions

Complete Example: $60,000/year, Single, Bi-Weekly, California

ItemAmount
Gross Pay (bi-weekly)$2,307.69
401(k) (6%)-$138.46
Federal Income Tax-$171.69
Social Security (6.2%)-$143.08
Medicare (1.45%)-$33.46
California State Tax (~4%)-$86.84
CA SDI (1.1%)-$25.38
Net Take-Home Pay$1,708.78

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Mustafa Bilgic
Operator disclosure

Mustafa Bilgic

Individual site operator; not a CPA, EA, or tax preparer

PayrollCalculator.us is operated by Mustafa Bilgic as an informational calculator site. Mustafa Bilgic is not a CPA, enrolled agent, or tax preparer; estimates should be checked against IRS and state revenue guidance and reviewed by a qualified professional.

Disclaimer: NOT tax advice. Mustafa Bilgic is not a CPA, EA, or tax preparer. Consult a qualified tax professional before relying on these estimates.